W.B. Barbazuk: search on Z-Library

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1

Targeted sequencing in the loblolly pine (Pinus taeda) megagenome by exome capture

Leandro Neves, John Davis, Brad Barbazuk, Matias Kirst

Journal:

BMC Proceedings

Year:

2011

Language:

english

File:

PDF, 93 KB

english, 2011

2

The Amborella Genome and the Evolution of Flowering Plants

Albert, V. A., Barbazuk, W. B., dePamphilis, C. W., Der, J. P., Leebens-Mack, J., Ma, H., Palmer, J. D., Rounsley, S., Sankoff, D., Schuster, S. C., Soltis, D. E., Soltis, P. S., Wessler, S. R., Wing,

Journal:

Year:

2013

Language:

english

File:

PDF, 2.05 MB

english, 2013

3

Validation of reference transcripts in strawberry (Fragariaspp.)

Clancy, Maureen A., Rosli, Hernan G., Chamala, Srikar, Barbazuk, W. Brad, Civello, P. Marcos, Folta, Kevin M.

Journal:

Molecular Genetics and Genomics

Year:

2013

Language:

english

File:

PDF, 502 KB

english, 2013

4

High-Throughput Genetic Mapping of Mutants via Quantitative Single Nucleotide Polymorphism Typing

Liu, S., Chen, H. D., Makarevitch, I., Shirmer, R., Emrich, S. J., Dietrich, C. R., Barbazuk, W. B., Springer, N. M., Schnable, P. S.

Journal:

Year:

2010

Language:

english

File:

PDF, 996 KB

english, 2010

5

Cellular events during scar-free skin regeneration in the spiny mouse, Acomys

Brant, Jason O., Yoon, Jung H., Polvadore, Trey, Barbazuk, William Brad, Maden, Malcolm

Journal:

Wound Repair and Regeneration

Year:

2016

Language:

english

File:

PDF, 1.06 MB

english, 2016

6

Maize Inbreds Exhibit High Levels of Copy Number Variation (CNV) and Presence/Absence Variation (PAV) in Genome Content

Springer, Nathan M., Ying, Kai, Fu, Yan, Ji, Tieming, Yeh, Cheng-Ting, Jia, Yi, Wu, Wei, Richmond, Todd, Kitzman, Jacob, Rosenbaum, Heidi, Iniguez, A. Leonardo, Barbazuk, W. Brad, Jeddeloh, Jeffrey A.

Journal:

Year:

2009

Language:

english

File:

PDF, 1.50 MB

english, 2009

7

The maize W22 genome provides a foundation for functional genomics and transposon biology

Springer, Nathan M., Anderson, Sarah N., Andorf, Carson M., Ahern, Kevin R., Bai, Fang, Barad, Omer, Barbazuk, W. Brad, Bass, Hank W., Baruch, Kobi, Ben-Zvi, Gil, Buckler, Edward S., Bukowski, Robert,

Journal:

Nature Genetics

Year:

2018

Language:

english

File:

PDF, 1.69 MB

english, 2018

8

Spaceflight-induced alternative splicing during seedling development in Arabidopsis thaliana

Beisel, Nicole S., Noble, Jerald, Barbazuk, W. Brad, Paul, Anna-Lisa, Ferl, Robert J.

Journal:

npj Microgravity

Year:

2019

File:

PDF, 963 KB

2019

9

ADVANCES IN THE USE OF NEXT-GENERATION SEQUENCE DATA IN PLANT SYSTEMATICS AND EVOLUTION

Soltis, D.E., Burleigh, G., Barbazuk, W.B., Moore, M.J., Soltis, P.S.

Journal:

Acta Horticulturae

Year:

2010

File:

PDF, 606 KB

2010

10

Reduced representation sequencing: A success in maize and a promise for other plant genomes

W. Brad Barbazuk, Joseph A. Bedell, Pablo D. Rabinowicz

Journal:

Year:

2005

Language:

english

File:

PDF, 195 KB

english, 2005

11

Protein kinase C-delta is a target of B-cell antigen receptor signaling

Stephen M Barbazuk, Michael R Gold

Journal:

Immunology Letters

Year:

1999

Language:

english

File:

PDF, 354 KB

english, 1999

12

Changes in protein abundance during powdery mildew infection of leaf tissues of Cabernet Sauvignon grapevine (Vitis vinifera L.)

Ellen Marsh, Sophie Alvarez, Leslie M. Hicks, W. Brad Barbazuk, Wenping Qiu, Laszlo Kovacs, Daniel Schachtman

Journal:

Year:

2010

Language:

english

File:

PDF, 165 KB

english, 2010

13

Characterization of duplicate gene evolution in the recent natural allopolyploid Tragopogon miscellus by next-generation sequencing and Sequenom iPLEX MassARRAY genotyping

RICHARD J. A. BUGGS, SRIKAR CHAMALA, WEI WU, LU GAO, GREGORY D. MAY, PATRICK S. SCHNABLE, DOUGLAS E. SOLTIS, PAMELA S. SOLTIS, W. BRAD BARBAZUK

Journal:

Molecular Ecology

Year:

2010

Language:

english

File:

PDF, 215 KB

english, 2010

14

SNP discovery via 454 transcriptome sequencing

W. Brad Barbazuk, Scott J. Emrich, Hsin D. Chen, Li Li, Patrick S. Schnable

Journal:

The Plant Journal

Year:

2007

Language:

english

File:

PDF, 526 KB

english, 2007

15

Functional analysis of the activation domain of RF2a, a rice transcription factor

M. Isabel Ordiz, Jaemo Yang, W. Brad Barbazuk, Roger N. Beachy

Journal:

Plant Biotechnology Journal

Year:

2010

Language:

english

File:

PDF, 460 KB

english, 2010

16

Genome-wide analysis of a land plant-specific acyl:coenzymeA synthetase (ACS) gene family in Arabidopsis, poplar, rice and Physcomitrella

Clarice De Azevedo Souza, Brad Barbazuk, Steven G. Ralph, Joerg Bohlmann, Bjoern Hamberger, Carl J. Douglas

Journal:

New Phytologist

Year:

2008

Language:

english

File:

PDF, 632 KB

english, 2008

17

Transcriptomic Shock Generates Evolutionary Novelty in a Newly Formed, Natural Allopolyploid Plant

Richard J.A. Buggs, Linjing Zhang, Nicholas Miles, Jennifer A. Tate, Lu Gao, Wu Wei, Patrick S. Schnable, W. Brad Barbazuk, Pamela S. Soltis, Douglas E. Soltis

Journal:

Current Biology

Year:

2011

Language:

english

File:

PDF, 322 KB

english, 2011

18

Rapid, Repeated, and Clustered Loss of Duplicate Genes in Allopolyploid Plant Populations of Independent Origin

Richard J.A. Buggs, Srikar Chamala, Wei Wu, Jennifer A. Tate, Patrick S. Schnable, Douglas E. Soltis, Pamela S. Soltis, W. Brad Barbazuk

Journal:

Current Biology

Year:

2012

Language:

english

File:

PDF, 199 KB

english, 2012

19

Extension of Lander-Waterman theory for sequencing filtered DNA libraries

Michael C Wendl, W Brad Barbazuk

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 348 KB

english, 2005

20

Optical mapping as a routine tool for bacterial genome sequence finishing

Phil Latreille, Stacie Norton, Barry S Goldman, John Henkhaus, Nancy Miller, Brad Barbazuk, Helge B Bode, Creg Darby, Zijin Du, Steve Forst, Sophie Gaudriault, Brad Goodner, Heidi Goodrich-Blair, Stev

Journal:

Year:

2007

Language:

english

File:

PDF, 522 KB

english, 2007

21

Novel and nodulation-regulated microRNAs in soybean roots

Senthil Subramanian, Yan Fu, Ramanjulu Sunkar, W Brad Barbazuk, Jian-Kang Zhu, Oliver Yu

Journal:

Year:

2008

Language:

english

File:

PDF, 1.27 MB

english, 2008

22

Ancient signals: comparative genomics of plant MAPK and MAPKK gene families

Louis-Philippe Hamel, Marie-Claude Nicole, Somrudee Sritubtim, Marie-Josée Morency, Margaret Ellis, Juergen Ehlting, Nathalie Beaudoin, Brad Barbazuk, Dan Klessig, Justin Lee, Greg Martin, John Mundy,

Journal:

Trends in Plant Science

Year:

2006

Language:

english

File:

PDF, 122 KB

english, 2006

23

Identification and characterization of a serine hydroxymethyltransferase isoform in Caenorhabditis briggsae

G.P. Vatcher, W.B. Barbazuk, N.J. O'Neil, M.A. Marra, T. Ha, D.L. Baillie

Journal:

Year:

1999

Language:

english

File:

PDF, 423 KB

english, 1999

24

On the Origins of Species: Does Evolution Repeat Itself in Polyploid Populations of Independent Origin?

Soltis, D.E., Buggs, R.J.A., Barbazuk, W.B., Schnable, P.S., Soltis, P.S.

Journal:

Cold Spring Harbor Symposia on Quantitative Biology

Year:

2009

Language:

english

File:

PDF, 1.22 MB

english, 2009

25

Next-generation sequencing and genome evolution in allopolyploids

Buggs, R. J. A., Renny-Byfield, S., Chester, M., Jordon-Thaden, I. E., Viccini, L. F., Chamala, S., Leitch, A. R., Schnable, P. S., Barbazuk, W. B., Soltis, P. S., Soltis, D. E.

Journal:

American Journal of Botany

Year:

2012

Language:

english

File:

PDF, 1.68 MB

english, 2012

26

Whole-exome targeted sequencing of the uncharacterized pine genome

Neves, Leandro G., Davis, John M., Barbazuk, William B., Kirst, Matias

Journal:

The Plant Journal

Year:

2013

Language:

english

File:

PDF, 563 KB

english, 2013

27

Genome-wide analyses of phenylpropanoid-related genes in Populus trichocarpa, Arabidopsis thaliana, and Oryza sativa: the Populus lignin toolbox and conservation and diversification of angiosperm gene familiesThis article is one of a selection of papers published in the Special Issue on Poplar Research in Canada.

Hamberger, Björn, Ellis, Margaret, Friedmann, Michael, de Azevedo Souza, Clarice, Barbazuk, Brad, Douglas, Carl J.

Journal:

Canadian Journal of Botany

Year:

2007

Language:

english

File:

PDF, 381 KB

english, 2007

28

A genome-enabled, high-throughput, and multiplexed fingerprinting platform for strawberry (FragariaL.)

Chambers, Alan, Carle, Scott, Njuguna, Wambui, Chamala, Srikar, Bassil, Nahla, Whitaker, Vance M., Barbazuk, W. Brad, Folta, Kevin M.

Journal:

Molecular Breeding

Year:

2013

Language:

english

File:

PDF, 453 KB

english, 2013

29

Effects on specific promoter DNA methylation in zebrafish embryos and larvae following benzo[a]pyrene exposure

Corrales, J., Fang, X., Thornton, C., Mei, W., Barbazuk, W.B., Duke, M., Scheffler, B.E., Willett, K.L.

Journal:

Comparative Biochemistry and Physiology Part C: Toxicology & Pharmacology

Year:

2014

Language:

english

File:

PDF, 878 KB

english, 2014

30

Radiation Hybrid Mapping of the Zebrafish Genome

Neil A. Hukriede, Lucille Joly, Michael Tsang, Jennifer Miles, Patricia Tellis, Jonathan A. Epstein, William B. Barbazuk, Frank N. Li, Barry Paw, John H. Postlethwait, Thomas J. Hudson, Leonard I. Zon

Journal:

Proceedings of the National Academy of Sciences

Year:

1999

Language:

english

File:

PDF, 1.74 MB

english, 1999

31

Genome-Wide Analysis of a Land Plant-Specific Acyl:Coenzymea Synthetase (ACS) Gene Family in Arabidopsis, Poplar, Rice and Physcomitrella

Clarice de Azevedo Souza, Brad Barbazuk, Steven G. Ralph, Joerg Bohlmann, Bjoern Hamberger and Carl J. Douglas

Journal:

New Phytologist

Year:

2008

Language:

english

File:

PDF, 4.00 MB

english, 2008

32

Genome-wide analyses of alternative splicing in plants: Opportunities and challenges

Barbazuk, W. B., Fu, Y., McGinnis, K. M.

Journal:

Genome Research

Year:

2008

Language:

english

File:

PDF, 548 KB

english, 2008

33

A High-Density Gene Map of Loblolly Pine (Pinus taeda L.) Based on Exome Sequence Capture Genotyping

Neves, L. G., Davis, J. M., Barbazuk, W. B., Kirst, M.

Journal:

G3 Genes|Genome|Genetics

Year:

2014

Language:

english

File:

PDF, 542 KB

english, 2014

34

Primers for Low-Copy Nuclear Genes in the Hawaiian Endemic Clermontia (Campanulaceae) and Cross-Amplification in Lobelioideae

Pillon, Yohan, Johansen, Jennifer, Sakishima, Tomoko, Chamala, Srikar, Barbazuk, W. Brad, Stacy, Elizabeth A.

Journal:

Applications in Plant Sciences

Year:

2013

Language:

english

File:

PDF, 364 KB

english, 2013

35

[IEEE Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004. - Stanford, CA, USA (16-19 Aug. 2004)] Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004. - Gene recovery of two genome-filtration sequencing techniques when applied to the maize genome

Xeiqun Xu,, Barbazuk, W.B., Chan, A.P., Pertea, G., Li Zheng,, Yucheng Feng,, Schubert, K., Foo Cheung,, Yuandan Lee,

Year:

2004

Language:

english

File:

PDF, 148 KB

english, 2004

36

Silencing of Soybean Seed Storage Proteins Results in a Rebalanced Protein Composition Preserving Seed Protein Content without Major Collateral Changes in the Metabolome and Transcriptome

Schmidt, M. A., Barbazuk, W. B., Sandford, M., May, G., Song, Z., Zhou, W., Nikolau, B. J., Herman, E. M.

Journal:

PLANT PHYSIOLOGY

Year:

2011

Language:

english

File:

PDF, 997 KB

english, 2011

37

Transcriptomic and Proteomic Analyses of Pericycle Cells of the Maize Primary Root

Dembinsky, D., Woll, K., Saleem, M., Liu, Y., Fu, Y., Borsuk, L. A., Lamkemeyer, T., Fladerer, C., Madlung, J., Barbazuk, B., Nordheim, A., Nettleton, D., Schnable, P. S., Hochholdinger, F.

Journal:

PLANT PHYSIOLOGY

Year:

2007

Language:

english

File:

PDF, 482 KB

english, 2007

38

Primers for Low-Copy Nuclear Genes in Metrosideros and Cross-Amplification in Myrtaceae

Pillon, Yohan, Johansen, Jennifer, Sakishima, Tomoko, Chamala, Srikar, Barbazuk, W. Brad, Stacy, Elizabeth A.

Journal:

Applications in Plant Sciences

Year:

2014

Language:

english

File:

PDF, 70 KB

english, 2014

39

Gene discovery and annotation using LCM-454 transcriptome sequencing

Emrich, S. J., Barbazuk, W. B., Li, L., Schnable, P. S.

Journal:

Genome Research

Year:

2006

Language:

english

File:

PDF, 227 KB

english, 2006

40

Caffeine exposure alters cardiac gene expression in embryonic cardiomyocytes

Fang, X., Mei, W., Barbazuk, W. B., Rivkees, S. A., Wendler, C. C.

Journal:

AJP Regulatory Integrative and Comparative Physiology

Year:

2014

Language:

english

File:

PDF, 10.37 MB

english, 2014

41

Evolution of sensory complexity recorded in a myxobacterial genome

Goldman, B. S., Nierman, W. C., Kaiser, D., Slater, S. C., Durkin, A. S., Eisen, J. A., Ronning, C. M., Barbazuk, W. B., Blanchard, M., Field, C., Halling, C., Hinkle, G., Iartchuk, O., Kim, H. S., Ma

Journal:

Proceedings of the National Academy of Sciences

Year:

2006

Language:

english

File:

PDF, 1.23 MB

english, 2006

42

B Cell Antigen Receptor Signaling Induces the Formation of Complexes Containing the Crk Adapter Proteins

Ingham, R. J., Krebs, D. L., Barbazuk, S. M., Turck, C. W., Hirai, H., Matsuda, M., Gold, M. R.

Journal:

Journal of Biological Chemistry

Year:

1996

Language:

english

File:

PDF, 1.03 MB

english, 1996

43

Natural Variation for Alleles Under Epigenetic Control by the Maize Chromomethylase Zmet2

Makarevitch, I., Stupar, R. M., Iniguez, A. L., Haun, W. J., Barbazuk, W. B., Kaeppler, S. M., Springer, N. M.

Journal:

Year:

2007

Language:

english

File:

PDF, 1.16 MB

english, 2007

44

Alternative splicing of anciently exonized 5S rRNA regulates plant transcription factor TFIIIA

Fu, Y., Bannach, O., Chen, H., Teune, J.-H., Schmitz, A., Steger, G., Xiong, L., Barbazuk, W. B.

Journal:

Genome Research

Year:

2009

Language:

english

File:

PDF, 1.42 MB

english, 2009

45

MarkerMiner 1.0: A New Application for Phylogenetic Marker Development Using Angiosperm Transcriptomes

Chamala, Srikar, García, Nicolás, Godden, Grant T., Krishnakumar, Vivek, Jordon-Thaden, Ingrid E., Smet, Riet De, Barbazuk, W. Brad, Soltis, Douglas E., Soltis, Pamela S.

Journal:

Applications in Plant Sciences

Year:

2015

Language:

english

File:

PDF, 1.72 MB

english, 2015

46

Radiation hybrid mapping of the zebrafish genome

Hukriede, N. A., Joly, L., Tsang, M., Miles, J., Tellis, P., Epstein, J. A., Barbazuk, W. B., Li, F. N., Paw, B., Postlethwait, J. H., Hudson, T. J., Zon, L. I., McPherson, J. D., Chevrette, M., Dawid

Journal:

Proceedings of the National Academy of Sciences

Year:

1999

Language:

english

File:

PDF, 975 KB

english, 1999

47

The Syntenic Relationship of the Zebrafish and Human Genomes

Barbazuk, W. B.

Journal:

Genome Research

Year:

2000

Language:

english

File:

PDF, 1.61 MB

english, 2000

48

The potential of genomics in plant systematics

Soltis, Douglas E., Gitzendanner, Matthew A., Stull, Gregory, Chester, Michael, Chanderbali, Andre, Chamala, Srikar, Jordon-Thaden, Ingrid, Soltis, Pamela S., Schnable, Patrick S., Barbazuk, W. Brad

Journal:

Year:

2013

Language:

english

File:

PDF, 1.08 MB

english, 2013

49

Sequence and Comparative Analysis of the Maize NB Mitochondrial Genome

Sandra W. Clifton, Patrick Minx, Christiane M.-R. Fauron, Michael Gibson, James O. Allen, Hui Sun, Melissa Thompson, W. Brad Barbazuk, Suman Kanuganti, Catherine Tayloe, Louis Meyer, Richard K. Wilson

Journal:

PLANT PHYSIOLOGY

Year:

2004

Language:

english

File:

PDF, 2.96 MB

english, 2004

50

Utility of Different Gene Enrichment Approaches toward Identifying and Sequencing the Maize Gene Space

Nathan Michael Springer, Xiequn Xu and W. Brad Barbazuk

Journal:

PLANT PHYSIOLOGY

Year:

2004

Language:

english

File:

PDF, 1.90 MB

english, 2004